What’s New¶
New in AutoAnnotate 1.5¶
UI updates to the AutoAnotate creation dialog.
Option to label clusters using the name of the most significant node in the cluster.
New slider that alows to choose the granularity of the clusters.
Support for using the MCODE app to find clusters in the network.
Thumbnail view at the bottom of the cluster panel.
Slider at bottom of cluster panel that allows to show/hide nodes according to their significance.
Better integration with EnrichmentMap.
Advanced options section in the Display Options panel.
Bug fixes.
New in AutoAnnotate 1.4¶
Requires Cytoscape 3.9
Display option for fill color palettes.
Display option for cluster padding.
Summary networks have improved attribute aggregation.
Attribute aggregation now works for edges as well as nodes.
There is a new settings dialog that shows when creating a summary network.
Attribute aggregation settings can be specified for each individual column.
Summary networks have improved integration with the EnrichmentMap App.
New default aggregators for EnrichmentMap columns that make more sense.
Summary networks work with the EnrichmentMap Heat Map panel.
Improved support for hidden nodes and edges.
Hiding nodes causes the clusters to resize to the visible nodes.
Hidden nodes and edges are ignored by clustering algorithms.
Several bug fixes
New in AutoAnnotate 1.3¶
Requires Cytoscape 3.7
Drawing annotations is much faster
Word Wrap feature for cluster labels
New Feature: copy annotations to another network
Support for column namespaces
“annotate” command now returns JSON
Cleaner layout for “quick start” panel
Cleaner layout for “display options” panel
Cleaner menu layouts
Several bug fixes